Data Editing Scaling and Preprocessing: Difference between revisions
Jump to navigation
Jump to search
imported>Jeremy (Importing text file) |
imported>Jeremy (Importing text file) |
||
Line 1: | Line 1: | ||
:[[alignmat]] - Alignment of matrices and N-way arrays. | |||
:[[ | :[[alignpeaks]] - Calibrates wavelength scale using standard peaks. | ||
:[[ | :[[alignspectra]] - Calibrates wavelength scale using standard spectrum. | ||
:[[ | :[[auto]] - Autoscales matrix to mean zero unit variance. | ||
:[[baseline]] - Subtracts a polynomial baseline offset from spectra. | :[[baseline]] - Subtracts a polynomial baseline offset from spectra. | ||
:[[baselinew]] - Baseline using windowed polynomial filter. | :[[baselinew]] - Baseline using windowed polynomial filter. | ||
:[[ | :[[batchdigester]] - Parse wafer or batch data into MPCA or Summary PCA form. | ||
:[[ | :[[coadd]] - Reduce resolution through combination of adjacent variables or samples. | ||
:[[ | :[[delsamps]] - Deletes samples (rows) or variables (columns) from data matrices. | ||
:[[deresolv]] - Changes high resolution spectra to low resolution. | |||
:[[editds]] - Editor for DataSet Objects. | |||
:[[excludemissing]] - Automatically exclude too-much missing data in a matrix. | |||
:[[glsw]] - Generalized least-squares weighting/preprocessing. | |||
:[[gscale]] - Group/block scaling for a single or multiple blocks. | |||
:[[gscaler]] - Applies group/block scaling to submatrices of a single matrix. | |||
:[[lamsel]] - Determines indices of wavelength axes in specified ranges. | |||
:[[logdecay]] - Mean centers and variance scales a matrix using the log decay of the variable axis. | |||
:[[lsq2top]] - Fits a polynomial to the top/(bottom) of data. | :[[lsq2top]] - Fits a polynomial to the top/(bottom) of data. | ||
:[[mdcheck]] - Missing Data Checker and infiller. | |||
:[[med2top]] - Fits a constant to top/(bottom) of data. | :[[med2top]] - Fits a constant to top/(bottom) of data. | ||
:[[medcn]] - Median center scales matrix to median zero. | |||
:[[ | :[[mncn]] - Scale matrix to mean zero. | ||
:[[ | |||
:[[mscorr]] - Multiplicative scatter/signal correction (MSC). | :[[mscorr]] - Multiplicative scatter/signal correction (MSC). | ||
:[[normaliz]] - Normalize rows of matrix. | :[[normaliz]] - Normalize rows of matrix. | ||
:[[ | :[[npreprocess]] - Preprocessing of multi-way arrays. | ||
:[[oscapp]] - Applies OSC model to new data. | |||
:[[ | :[[osccalc]] - Calculates orthogonal signal correction (OSC). | ||
:[[ | :[[polyinterp]] - Polynomial interpolation, smoothing, and differentiation. | ||
:[[ | :[[preprocess]] - Selection and application of standard preprocessing structures. | ||
:[[ | :[[preprouser]] - User-defined preprocessing methods. | ||
:[[registerspec]] - Shift spectra based on expected peak locations. | |||
:[[rescale]] - Scales data back to original scaling. | |||
:[[savgol]] - Savitzky-Golay smoothing and differentiation. | |||
:[[savgolcv]] - Cross-validation for Savitzky-Golay smoothing and differentiation. | |||
:[[scale]] - Scales data using specified means and std. devs. | :[[scale]] - Scales data using specified means and std. devs. | ||
:[[shuffle]] - Randomly re-orders matrix and multiple blocks rows. | :[[shuffle]] - Randomly re-orders matrix and multiple blocks rows. | ||
:[[snv]] - Standard normal variate scaling. | |||
:[[specedit]] - GUI for selecting spectral regions on a plot. | :[[specedit]] - GUI for selecting spectral regions on a plot. | ||
:[[super_reduce]] - Eliminates highly correlated variables. | |||
:[[unfoldm]] - Rearranges (unfolds) an augmented matrix to row vectors. | :[[unfoldm]] - Rearranges (unfolds) an augmented matrix to row vectors. | ||
:[[unfoldmw]] - Unfolds multiway arrays along specified order. | :[[unfoldmw]] - Unfolds multiway arrays along specified order. | ||
:[[ | :[[wlsbaseline]] - Weighted least squares baseline function. | ||
(Sub topic of [[Categorical_Index|Categorical_Index]]) |
Revision as of 15:40, 2 September 2008
- alignmat - Alignment of matrices and N-way arrays.
- alignpeaks - Calibrates wavelength scale using standard peaks.
- alignspectra - Calibrates wavelength scale using standard spectrum.
- auto - Autoscales matrix to mean zero unit variance.
- baseline - Subtracts a polynomial baseline offset from spectra.
- baselinew - Baseline using windowed polynomial filter.
- batchdigester - Parse wafer or batch data into MPCA or Summary PCA form.
- coadd - Reduce resolution through combination of adjacent variables or samples.
- delsamps - Deletes samples (rows) or variables (columns) from data matrices.
- deresolv - Changes high resolution spectra to low resolution.
- editds - Editor for DataSet Objects.
- excludemissing - Automatically exclude too-much missing data in a matrix.
- glsw - Generalized least-squares weighting/preprocessing.
- gscale - Group/block scaling for a single or multiple blocks.
- gscaler - Applies group/block scaling to submatrices of a single matrix.
- lamsel - Determines indices of wavelength axes in specified ranges.
- logdecay - Mean centers and variance scales a matrix using the log decay of the variable axis.
- lsq2top - Fits a polynomial to the top/(bottom) of data.
- mdcheck - Missing Data Checker and infiller.
- med2top - Fits a constant to top/(bottom) of data.
- medcn - Median center scales matrix to median zero.
- mncn - Scale matrix to mean zero.
- mscorr - Multiplicative scatter/signal correction (MSC).
- normaliz - Normalize rows of matrix.
- npreprocess - Preprocessing of multi-way arrays.
- oscapp - Applies OSC model to new data.
- osccalc - Calculates orthogonal signal correction (OSC).
- polyinterp - Polynomial interpolation, smoothing, and differentiation.
- preprocess - Selection and application of standard preprocessing structures.
- preprouser - User-defined preprocessing methods.
- registerspec - Shift spectra based on expected peak locations.
- rescale - Scales data back to original scaling.
- savgol - Savitzky-Golay smoothing and differentiation.
- savgolcv - Cross-validation for Savitzky-Golay smoothing and differentiation.
- scale - Scales data using specified means and std. devs.
- shuffle - Randomly re-orders matrix and multiple blocks rows.
- snv - Standard normal variate scaling.
- specedit - GUI for selecting spectral regions on a plot.
- super_reduce - Eliminates highly correlated variables.
- unfoldm - Rearranges (unfolds) an augmented matrix to row vectors.
- unfoldmw - Unfolds multiway arrays along specified order.
- wlsbaseline - Weighted least squares baseline function.
(Sub topic of Categorical_Index)